Hi Tracy,

 

I’m wondering if you have any success with other subjects. Can you attach the failed recon-all.log?

 

Best,

 

Yujing

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Tracy Riggins
Sent: Sunday, March 5, 2023 1:22 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Segmentation fault (core dumped)

 

        External Email - Use Caution        

Greetings FS experts:

 

We are trying to run recon-all -s -qcache on a handful of brains processed in freesurfer v5.1.0.   (it's an old dataset...5.1 makes the most sense for our purpose.)

 

The error is below:

 

 

--------------------------------------
#@# 1/1 HMN080 Fri Mar  3 12:14:44 EST 2023 --------------
-----------------------
mri_surf2surf --srcsubject HMN080 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.51930/HMN080.1.mgh --sval /export/data/seahorse_ncdl/HMN/data/HMN080/surf/lh.thickness --sfmt curv --noreshape --no-cortex
Segmentation fault (core dumped)
Linux seahorse.umd.edu 3.10.0-1160.80.1.el7.x86_64 #1 SMP Sat Oct 8 18:13:21 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s HMN080 exited with ERRORS at Fri Mar  3 12:14:48 EST 2023

 

Can you assist?  OR perhaps tell us where to find the core dump file, which may have more information?


--

Tracy Riggins, Ph.D.

Pronouns: she/her/hers

Associate Professor of Psychology

4094 Campus Drive, Biology/Psychology Building 2147J

University of Maryland, College Park, MD 20742

Zoom Meeting ID: 6751666548

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