Dear FS users,

I'm trying the -localGI on a linux Centos machine, but I'm facing some problems:
1. should I worry about the Warning: Unable to open display 'iconic'.  You will not be able to display graphics on the screen. ?
2. the script asks me if I wan to remove a file (rm: remove regular file `/tmp/tp726715349117711.load_mgh.8128471.mgh'?).  Should I say yes and remove it? Is it important? Should I keep it? I tried answering no, but now everything seems to be stuck without performing any subsequent processing.

Below there is the output I got.

Thank you.
Regards,
elisa


[root@gc02lx fselisa]# recon-all -s 1379341346/ -sd /root/Desktop/fselisa/ -localGI
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
INFO: SUBJECTS_DIR is /root/Desktop/fselisa
Actual FREESURFER_HOME /usr/local/freesurfer
-rw-r--r--. 1 root root 1624545 Jun 26 18:08 /root/Desktop/fselisa/1379341346/scripts/recon-all.log
Linux gc02lx 2.6.32-358.2.1.el6.x86_64 #1 SMP Tue Mar 12 14:18:09 CDT 2013 x86_64 x86_64 x86_64 GNU/Linux
INFO: current FREESURFER_HOME does not match that of previous processing.
    Current: /usr/local/freesurfer
    Previous: /home/tmp/6004023.clrlcgce03.in2p3.fr/CREAM251988513/DIRAC_lhrUhWpilot/6418014/recon-all.sh-3038867747447129/freesurfer
/root/Desktop/fselisa/1379341346/surf
#--------------------------------------------
#@# Local Gyrification Index lh Fri Jun 27 09:23:34 CEST 2014

 mris_compute_lgi --i lh.pial

=================
rm -Rf /root/Desktop/fselisa/1379341346/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mkdir -p /root/Desktop/fselisa/1379341346/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mris_fill -c -r 1 lh.pial /root/Desktop/fselisa/1379341346/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz
=================
reading surface from lh.pial...
writing filled volume to /root/Desktop/fselisa/1379341346/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz...
conforming output volume
setting resolution for intermediate calculations to 1.0000
=================
make_outer_surface('/root/Desktop/fselisa/1379341346/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/root/Desktop/fselisa/1379341346/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit
=================
Warning: Unable to open display 'iconic'.  You will not be able to display graphics on the screen.

                            < M A T L A B (R) >
                  Copyright 1984-2012 The MathWorks, Inc.
                    R2012b (8.0.0.783) 64-bit (glnxa64)
                              August 22, 2012

 
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
 
>> reading filled volume...
rm: remove regular file `/tmp/tp726715349117711.load_mgh.8128471.mgh'?



--
Elisa Veronese - PhD

Research Unit on Brain Imaging and Neuropsychology (RUBIN)
Inter-University Center for Behavioral Neurosciences (ICBN)
University of Udine and University of Verona, Italy