Hello FreeSurfer experts,
I'm attempting to follow the longitudinal pipeline, as described on the longitudinal processing tutorial (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial_tktools),
while creating a within-subject template, I get the following error when I run this command:
recon-all -base Subj03_template -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TO/Subj03_TO.nii -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TS/Subj03_TS.nii -all
error: mghRead(/Users/bernis/Calismalar/results/Subj03_TS.nii/mri/rawavg.mgz, -1): could not open file
Does anyone have any idea how I can resolve this problem?
1) FreeSurfer version: v7.2.0
2) Platform: MacOS Big Sur release 11.6.7
3) recon-all.log: see attached
Best regards,
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Bernis Sütçübaşı |
