Hi,

I also had this error in the past. It would be reasonable to try and log all the steps now, because I didn't manage to find out where that error was coming from. In my case - I made adjustments to my own scripts.

I can take a look at your scripts, because I didn't manage to recreate that error.

also - it would be probable better to switch to at least FS 6.1

Best,

Alex

Le mar. 9 juin 2020, à 10 h 26, COLLEEN PLETCHER <ccpletcher@medicine.wisc.edu> a écrit :

External Email - Use Caution

Hello,

I am currently attempting to run a brain through the longitudinal stream after performing edits on the longitudinal brain, using the command recon-all -long timepoint1 base -autorecon2-wm -autorecon3. I am getting an error that says Unmatched ". All of the data for both timepoint 1 and the base is there and readable. I am using version 6.0. Any advice on how to fix this problem?

Thank you!

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer