setenv SUBJECTS_DIR  /gs/gsfs0/users/helena_blumen_lab/TRACULA/
set dtroot =  /gs/gsfs0/users/helena_blumen_lab/TRACULA/
set subjlist = 30018
set runlist = 1
set dcmroot =  /gs/gsfs0/users/helena_blumen_lab/TRACULA/
set dcmlist = 30018/30018_WIP_110_DTI66d_2mm_SF3_SENSE_20190520152420_1201.nii
set bvecfile = 30018/bvecs.txt
set bvalfile = 30018/bvals.txt
set dob0 = 0
set doeddy = 0
set intrareg = 3
set intradof = 9
set intrarot = 90
set interreg = 5
set intertrg =  /public/apps/freesurfer/7.2.0/trctrain/hcp/MGH35_HCP_FA_template.nii.gz
set segname = aparc+aseg
set usethalnuc = 0
set usemaskanat = 1
set thrbet = 0.3
set trainfile =  /public/apps/freesurfer/7.2.0/trctrain/hcp/trainlist.txt
set nstick = 2
set nburnin = 200
set nsample = 7500
set nkeep = 5
set reinit = 0