Dear Koen,

It worked...
Thanks a lot


From: Koen Van Leemput <koen@nmr.mgh.harvard.edu>
To: Anupa AV <av.anupa@yahoo.com>
Cc: Freesurfer Mailinglist <freesurfer@nmr.mgh.harvard.edu>; Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Sent: Thursday, September 19, 2013 12:48 PM
Subject: Re: [Freesurfer] recon-all-hippo-subfeilds

Hi,
I believe "recon-all -s NC -hippo-subfields" should do that.
Please let us know if it doesn't.
Koen
On Sep 19, 2013 9:00 AM, "Anupa AV" <av.anupa@yahoo.com> wrote:
Dear FS experts,

I've a query regarding the recon-all analysis.

I ran recon-all using the following command
eg.
recon-all -i location/nc.nii -s NC -all

I got the analysis done.
Now I'm interested to calculate the hippocampal structures.

I knw the command line for that also

recon-all -i location/nc.nii -s NC -all -hippo-subfields


Problem for me is that I've 45 subjects. I ran recon-all without hippo-subfields commands.
i.e. from  motion correction to Ex-vivo Entorhinal Cortex Label rh. (log file)

Is there any way to do hippo-sufields alone than running the whole steps again (which is very time consuming).

Thanks in advance.

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