Hi Yann (and anyone else with mri_cc failures on mac),

We have a fix that we'll include in an upcoming 7.1.1 patch release. If you'd like a quick local fix, you can update your distribution with the new version of mri_cc by running the following commands (this might require sudo):

cd $FREESURFER_HOME/bin

rm mri_cc

curl https://surfer.nmr.mgh.harvard.edu/pub/dist/tmp_patch/mri_cc -O mri_cc

chmod +x mri_cc

Please let us know if this does not solve your issue.

Andrew

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Yann Quidé <yannquide@gmail.com>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, June 29, 2020 at 2:35 AM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Error recon-all mri_cc

        External Email - Use Caution        

Hi team,

I appreciate everyone is busy, but did anyone have time to look at my subject?

It was uploaded on June 18. It’s called yannquide.tar.gz

Thanks for your time.

Yann

On 22 Jun 2020, at 12:51 pm, Yann Quidé <yannquide@gmail.com> wrote:

Hi team,

I was just wondering if you received my file and if you had time to look at it?

Thanks,

Yann

On 18 Jun 2020, at 7:08 am, Yann Quidé <yannquide@gmail.com> wrote:

Hi Doug,

Thanks for this. I sent the file; it’s called yannquide.tar.gz.

Yann

On 16 Jun 2020, at 11:56 pm, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

Can you upload the subject so I can take a look? Instructions below


From the linux command line,
Create the file you want to upload, eg,
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log  into our anonymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymous" (no quotes)
It will ask you for a password: use "anonymous" (no quotes)
cd transfer/incoming
binary
put subject.tar.gz
Send an email that the file has been and the name of the file.

On 6/15/2020 8:28 PM, Yann Quidé wrote:

        External Email - Use Caution       

Hi there,

I am using Freesurfer v7.1.0 and encounter an error for few of my subjects only.
Recon-all finishes with errors, and it seems this occurs during the segmentation.

What can I do to fix this?

I attached the recon-all log for one of my subject.

Thanks,

Yann

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_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer