---

From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: Antonella Kis <atorok9@yahoo.com>
Sent: Friday, July 29, 2011 5:24 PM
Subject: Re: [Freesurfer] Error with aparcstats2table

doug and nick can help with that
On Fri, 29 Jul 2011, Antonella Kis wrote:

> Hi Bruce,
>
> Thanks again for helping. I mean in the aparc stats I have for each segmentation the  Number of Vertices, Surface Area, etc. I want this data
> to be exported in a table where in the first ro I will have the thickness  of each segmentation(bankssts  , etc) and the second row I want the
> Number of Vertices, for each subject.
>
> Thanks.
> Antonella
>
> _______________________________________________________________________________________________________________________________________________
> From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> To: Antonella Kis <atorok9@yahoo.com>
> Cc: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
> Sent: Friday, July 29, 2011 3:18 PM
> Subject: Re: [Freesurfer] Error with aparcstats2table
>
> Hi Antonella,
>
> what do you mean by no. of vertices? The total # in the surface? You can get that with mri_info. It's loosely related to surface area, but not
> that interested a quantity.
>
> Bruce
>
>
> On Fri, 29 Jul 2011, Antonella Kis wrote:
>
> > Hello everyone,
> >
> >
> >  I was trying to create a table with my statistical results (the cortical thickness and the number of vertices) and I was running:
> >
> > aparcstats2table --hemi lh --subjects bert NPI001 --meas thickness -t lh.aparcstas.THICKNESS.txt
> >
> >  When I tried to also get the number of vertices a table by running: aparcstats2table --hemi lh --subjects bert NPI001 --meas vertices -t
> >  lh.aparcstas.VERTICES.txt I got the following error:
> >
> >  aparcstats2table: error: option --measure: invalid choice: 'Voxels' (choose from 'area', 'volume', 'thickness', 'thicknessstd', 'meancurv')
> >
> >  I Why I don't have an option for the no. of vertices?
> >
> > Can I get a table with both data: cortical thickness and no. of vertices?
> >
> > Many thanks,
> >  Antonella
> >
> >
> >
> >
>
>
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