Thank you !

On Wednesday, November 18, 2015, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

There is not an automated way to do this. You might be able to run the
steps piecemeal by specifying the flags for each step individually

On 11/18/2015 04:29 PM, Lauren Bystrom wrote:
> Hello all,
> I am trying to run freesurfer on a set of subjects that have tumors in
> their brain. To get around the tumor, I only want to run freesurfer on
> one of the hemispheres. When I use hemi -?h, freesurfer exits once it
> hits the other hemisphere.
> This is a problem because it doesn't go back to finish the rest of
> recon-all for the hemisphere I want.
> Is there a way to change the order of files created with the recon-all
> script so all of the volumetric, and all of the wm, and all of
> broadmann's area, etc. is completed for one hemisphere before being
> run for the other?
> Thanks!
> Lauren Bystrom
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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