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Dear Freesurfer Developers,
I am sorry I did not include the error message.I am attempting to convert some dicom files to mgz via mri_convert command. However, for only 5 participants from my cohort I get the following error.
Could you please help me to resolve the problem?
(base) Georgias-MBP:HC21 georgina$ mri_convert 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm 001.mgz
mri_convert.bin 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm 001.mgz$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $reading from 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm...Starting DICOMRead2()dcmfile = /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcmdcmdir = /Users/georgina/Downloads/HD/HC21ERROR: GetDICOMInfo(): dcmGetDWIParams() 9DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcmbreak DICOMRead.c:5228Ref Series No = 201Found 172 files, checking for dicomsERROR: GetDICOMInfo(): dcmGetDWIParams() 9ERROR: GetDICOMInfo(): dcmGetDWIParams() 9DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491025102.dcmbreak DICOMRead.c:5228First SortingComputing Slice DirectionVs: -0.99478 0.102 0.0033Vs: -0.994779 0.102 0.0033Second SortingIsDWI = 0, IsPhilipsDWI = 0Counting framesnframes = 1nslices = 82ndcmfiles = 82PE Dir = (dicom read)CTABreadASCII(/Applications/freesurfer/FreeSurferColorLUT.txt): could not open fileToo many open filesERROR: reading /Applications/freesurfer/FreeSurferColorLUT.txtLoading pixel dataERROR: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992042.dcm is not a dicom file70092 Requested element (18 9089) not found in DCM_GetElementVM
Thank you in advance,Georgina
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