Hi Nick,

Thanks for your help. I'm running v4.5.0 on our cluster. I'm don't think the latest version has been installed. I might just ask them to install v5.2. Should I re-run the recon_all steps again with this latest version? Should I disregard the results that have already been computed with this error? I am still a Freesurfer beginner unfortunately so apologies for asking such questions!

Thanks again,

Sinead 

On 4 March 2013 14:50, Nick Schmansky <nicks@nmr.mgh.harvard.edu> wrote:
Sinead

Are you running v5.0.0?  This link has some info on fixing the problem,
something your admin will have to do:

https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2009-December/012846.html

Or better yet you can them install install v5.2, which doesnt have that
dependency in mris_volmask:

https://surfer.nmr.mgh.harvard.edu/fswiki/Download

Nick


> Dear members,
>
> I am currently conducting cortical thickness analysis and I have ran the
> recon_all step. The appropriate files have been created including
> aseg.mgz,
> brainmask.mgz, aseg.stats etc. and therefore volumes and cortical
> thickness
> measures have been calculated, however, when I look at the output of my
> script it states that the job has exited with errors (see below)
>
> mris_volmask --label_left_white 2 --label_left_ribbon 3
> --label_right_white
> 41 --label_right_ribbon 42 --save_ribbon --save_distance 001
>
> mris_volmask.bin: error while loading shared libraries: libXss.so.1:
> cannot
> open shared object file: No such file or directory
> Linux tcin-n05.cluster 2.6.18-274.18.1.el5 #1 SMP Thu Feb 9 12:20:03 EST
> 2012 x86_64 x86_64 x86_64 GNU/Linux
>
> recon-all exited with ERRORS at Fri Mar  1 20:00:42 GMT 2013
>
>
> I'm not too sure what the error is or how to fix it. However, as the
> relevant files have been created, should I be too concerned about this?
> Also, I should mention that I am running my scripts on a high performance
> computing cluster and not locally on my linux.
>
> Thank you for your help!
>
>
> Sinead
>
>
> --
> Sinead Kelly
> Neuropsychiatric Genetics Group
> Trinity Centre
> St. James's Hospital
> Dublin 8
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer



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--
Sinead Kelly
Neuropsychiatric Genetics Group
Trinity Centre
St. James's Hospital
Dublin 8