the wm.mgz file that is in your anlayzed data?
On 05/19/2016 10:33 AM, Mahtab Farahbakhsh wrote:
> Dear Bruce,
>
> This is the input command and the output that I get:
>
> bash-3.2$ mris_anatomical_stats -l anon/label/lh.BA45.label -f anon lh
> anon lh
> limiting computations to label anon/label/lh.BA45.label.
> reading volume
> /Applications/freesurfer/experimental_data/TG/anon/lh/mri/wm.mgz...
> mghRead(/Applications/freesurfer/experimental_data/TG/anon/lh/mri/wm.mgz,
> -1): could not open file
> mris_anatomical_stats: could not read input volume
> /Applications/freesurfer/experimental_data/TG/anon/lh/mri/wm.mgz
>
> or:
>
> mris_anatomical_stats -l anon/label/lh.BA45.label anon lh
> limiting computations to label anon/label/lh.BA45.label.
> reading volume
> /Applications/freesurfer/experimental_data/TG/anon/anon/mri/wm.mgz...
> mghRead(/Applications/freesurfer/experimental_data/TG/anon/anon/mri/wm.mgz,
> -1): could not open file
> mris_anatomical_stats: could not read input volume
> /Applications/freesurfer/experimental_data/TG/anon/anon/mri/wm.mgz
>
>
> This is the SUBJECTS_DIR
>
> export SUBJECTS_DIR=/Applications/freesurfer/experimental_data/TG/anon
>
> cd $SUBJECTS_DIR
>
> Best Regards,
> Mahtab.
>
>
> On 19 May 2016 at 13:41, Bruce Fischl <fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>> wrote:
>
> Hi Mahtab
>
> can you please send the screen output of the command you ran and
> what it printed, and also what the environment variable
> SUBJECTS_DIR is?
>
> cheers
> Bruce
>
> On Thu, 19 May 2016, Mahtab Farahbakhsh wrote:
>
> Dear FreeSurfer,
> I have a problem when I use mris_anatomical_stats. It gives me
> an error
> saying that it couldn't read the input volume which is the
> wm.mgz file.
> would you please help me how I should fix this problem?
>
> Best Regards,
> Mahtab.
>
>
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