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Hello Experts,

I am using mri_segstats with the --ctab flag to extract dti and suvr values from a white matter hyperintensities parcellation. Running mri_segstats on the image and parcellation with --ctab only reports on non-empty segmentations. I want it to also report on the empty segmentations. 

Is there a flag or any other freesurfer commands that i can use? 

Summary: I want mri_segstats to report on non-empty and empty segmentations, not just the former. 

Cheers. 

cmdline mri_segstats --seg wmh_lobar.nii.gz --i subj_rescaled_wholecere_PET2T1_smooth.nii.gz --sum SUVR_WMH_lobar.stats --ctab WMColorLUT.ctab --pv norm.mgz
Loading wmh_lobar.nii.gz
INFO: using NIfTI-1 qform
Loading subj_rescaled_wholecere_PET2T1_smooth.nii.gz
Loading norm.mgz
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 13 segmentations
Computing statistics for each segmentationReporting on 11 segmentations
Using PrintSegStat
mri_segstats done  

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