when you  run mri_annotation2label you can specify the surface
(--surface). By default, it uses white, but you can specify pial instead


On 08/21/2017 11:33 AM, Fereshte wrote:
> Hello FreeSurfer developers,
> Is it possible to have the segmentation labels after the pial surface
> is done in FreeSurfer? I mean once you do the topology correction and
> expand the inner cortical boundary to make the pial surface ; is it
> possible to have the inner and outer cortical boundaries as labels
> from pial surface?
> Looking forward to hearing from you
> Sincerely,
> Fereshte Ramezani
>
>
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