External Email - Use Caution
export FREESURFER_HOME=/Applications/freesurfer/7.3.2
export PROJECT_DIR=/Users/angelafang/Library/CloudStorage/OneDrive-UW/VicExt
export SUBJECTS_DIR=$PROJECT_DIR/subjects
source $FREESURFER_HOME/SetUpFreeSurfer.sh
However, when I run preproc-sess in my analysis folder I get the following error:
command: preproc-sess -sf subjectlist -fsd bold -stc siemens -surface fsaverage lhrh -mni305 -fwhm 5 -per-run
error message:
++ Initializing alignment base
Choleski factorization failure in startup_lsqfit
mri_startup_lsqfit: bad call to startup_lsqfit!
++ Starting final pass on 44 sub-bricks: 0
Fatal Signal 11 (SIGSEGV) received
mri_3dalign_one
3dvolreg main
Bottom of Debug Stack
** AFNI version = AFNI_2011_12_21_1014 Compile date = May 22 2013
** [[Precompiled binary macosx_10.7_Intel_64: May 22 2013]]
** Program Abort **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
ERROR: 3dvolreg.afni
Invalid null command.
I'm confused on what more I need to install? Is there a way I can get an updated link to the tar file with the relevant software packages needed to run FSFAST?
Best,
Gillian Grennan