Another user seems to be experiencing a similar issue right now. How many subjects are you trying to average? I haven’t been able to replicate this, so it might require uploading some subjects. Can you send the make_average_volume.log?

On Nov 27, 2017, at 10:16 AM, Sofia Rodriguez Penuela <srodpen@upo.es> wrote:

Hello,

when using "make_average_subject" in Freesurfer 6, we have noted that the medial wall label only contains 1 vertex leading, after applying "mri_glmfit, to significant results in regions of the medial wall. This problem didn't appear in Fresurfer 5.3

Is there something different with the command "make_average_subject" in Freesurfer 6 that prevent to correctly mask the cortical surface? We would like to include only cortical vertices in our analysis.

Thank you in advance.

Best,
Sofia

--

Sofía Rodríguez Peñuela, Técnico de Laboratorio.
Laboratorio de Neurociencia Funcional
Departamento de Fisiología, Anatomía y Biología Celular.
Universidad Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Sevilla
- España -
Movil: 627273085
Email: srodpen@upo.es
http://www.upo.es/neuroaging/es/

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