$ mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab C02DL_t1 rh white

INFO: using TH3 volume calc

INFO: assuming MGZ format for volumes.

computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot.

reading volume /home/quadrellis/civ_ptsd/structural_fs/C02DL_t1/mri/wm.mgz...

reading input surface /home/quadrellis/civ_ptsd/structural_fs/C02DL_t1/surf/rh.white...

Using TH3 vertex volume calc

Total face volume 229272

Total vertex volume 224839 (mask=0)

reading input pial surface /home/quadrellis/civ_ptsd/structural_fs/C02DL_t1/surf/rh.pial...

reading input white surface /home/quadrellis/civ_ptsd/structural_fs/C02DL_t1/surf/rh.white...

reading colortable from annotation file...

colortable with 15 entries read (originally /usr/local/freesurfer/6.0.beta/average/colortable_BA.txt)

Saving annotation colortable ./BA_exvivo.thresh.ctab

table columns are:

    number of vertices

    total surface area (mm^2)

    total gray matter volume (mm^3)

    average cortical thickness +- standard deviation (mm)

    integrated rectified mean curvature

    integrated rectified Gaussian curvature

    folding index

    intrinsic curvature index

    structure name

atlas_icv (eTIV) = 1539395 mm^3    (det: 1.265500 )

lhCtxGM: 216981.653 216526.000  diff=  455.7  pctdiff= 0.210

rhCtxGM: 224488.981 223971.000  diff=  518.0  pctdiff= 0.231

lhCtxWM: 221893.625 222489.000  diff= -595.4  pctdiff=-0.268

rhCtxWM: 224605.205 224852.000  diff= -246.8  pctdiff=-0.110

SubCortGMVol  51078.000

SupraTentVol  967354.464 (965462.000) diff=1892.464 pctdiff=0.196

SupraTentVolNotVent  940904.464 (939012.000) diff=1892.464 pctdiff=0.201

BrainSegVol  1111453.000 (1108301.000) diff=3152.000 pctdiff=0.284

BrainSegVolNotVent  1080460.000 (1080411.464) diff=48.536 pctdiff=0.004

BrainSegVolNotVent  1080460.000

CerebellumVol 141268.000

VentChorVol   26450.000

3rd4th5thCSF   4543.000

CSFVol  1413.000, OptChiasmVol   158.000

MaskVol 1614399.000

  663    321   1164  2.414 0.317     0.126     0.029       10     0.7  BA1_exvivo

 1878   1200   2522  2.055 0.423     0.096     0.018       13     1.5  BA2_exvivo

  846    653    728  1.608 0.324     0.159     0.035        9     1.3  BA3a_exvivo

 1782   1155   1902  1.588 0.371     0.089     0.018        9     1.5  BA3b_exvivo

  930    539   1396  2.423 0.439     0.108     0.030        8     1.4  BA4a_exvivo

 1048    718   1669  2.480 0.403     0.093     0.021        4     1.0  BA4p_exvivo

 6264   3392   9732  2.494 0.482     0.103     0.030       66     7.5  BA6_exvivo

  951    631   1818  2.403 0.428     0.123     0.027       16     1.1  BA44_exvivo

  915    650   1780  2.212 0.349     0.139     0.031       16     1.0  BA45_exvivo

 3074   2189   3724  1.675 0.473     0.134     0.035       33     4.8  V1_exvivo

 4690   2886   4907  1.698 0.528     0.151     0.041       79     8.3  V2_exvivo

  324    198    535  2.216 0.477     0.135     0.036        5     0.5  MT_exvivo

  285    170    847  3.400 0.783     0.132     0.036        4     0.4  perirhinal_exvivo

  245    177    522  2.386 0.732     0.126     0.020        2     0.2  entorhinal_exvivo