Thanks.  I tried running it on oct and I'm getting another error earlier on recon process.

The subjects directory is: /homes/11/rzepeda/Recon

I'm using the following command:

[oct:~/Recon] (nmr-std-env) recon-all -autorecon1 -autorecon2 -subject MG25_SurferOutput -i MG25/MRI/1.3.12.2.1107.5.2.30.26039.3.2007081618514610873067809.dcm

I get the following error:

$Id: gauss_4dfp.c,v 1.2.2.1 2009/05/15 21:44:49 nicks Exp $
Reading: talsrcimg.4dfp.img
Writing: talsrcimg_g11.4dfp.img
image dimensions 256 256 256 padded to 288 288 288
processing volume 1gauss_4dfp: talsrcimg_g11.4dfp.img write error

ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=255
ERROR: mpr2mni305 execution aborted
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log

Is this related to the same problem as before or is it something different?  I was surprised that multnomah wasn't able to handle that recon, I've run many recons there and never had this problem.

Thank you!

Rodrigo

On Wed, Aug 26, 2009 at 1:34 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
Looks like that is a pretty weak computer. Can you run it on a stronger computer?

Rodrigo Zepeda wrote:
Hi,

  I'm getting an error trying to run a reconstruction.

I'm working on multnomah and my subjects directory is: /autofs/space/multnomah_002/users/Cashlab/

I'm using the following command:

[multnomah:Cashlab] (nmr-std-env) recon-all -autorecon1 -autorecon2 -subject MG25_SurferOutput -i MG25/MRI/1.3.12.2.1107.5.2.30.26039.3.2007081618514610873067809.dcm


I get the following error:

writing labeled volume to aseg.auto_noCCseg.mgz...
ERROR: opening pipe gzip -f -c > aseg.auto_noCCseg.mgz, errno = 12
Cannot allocate memory
mri_ca_label: MRIwrite(aseg.auto_noCCseg.mgz) failed

My environment information is:

-------- freesurfer-Linux-centos4-stable-v4.5.0-20090823 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /usr/local/freesurfer/stable4
FSFAST_HOME       /usr/local/freesurfer/stable4/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR      /autofs/space/multnomah_002/users/Cashlab
MNI_DIR           /usr/local/freesurfer/stable4/mni
FSL_DIR           /usr/pubsw/packages/fsl/current

Any help will be appreciated!

Thanks,

Rodrigo

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