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Hi Vasudev,

What lookup table are you using to visualize the results? Are you using FreeView from the development version, and visualizing the segmentation with the default lookup table?

Cheers,

/Eugenio

Juan Eugenio Iglesias

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Dev vasu <vasudevamurthy.devulapally@gmail.com>
Sent: Tuesday, October 9, 2018 10:06:53 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Thalamic Nuclei segmentation results

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Dear all,

I have used Freesurfer pipeline for Thalamic Nuclei segmentation, the results of segmentation appear to be very poor, i am annexing the results , please kindly review if there is any thing wrong with the segmentation results.

Thanks

Vasudev