Dear Freesurfer Developers,

My goal is to build a study-specific pediatric template brain to rerun the recon-all-all. I am encountering the same error while running make_average_subject Freesurfer version 6.0.0 on MacOS High Sierra 10.13.6 as described here and implemented the suggested changes replacing mri_glmfit-sim, make_average_subject, make_average_surface, and mri_aparc2aseg: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2017-November/054933.html

Yet, the the mri/norm.mgz file is still missing (see attached logs).

Exits on:

#@# AParc-to-ASeg aparc Mon Jul 16 17:45:19 CEST 2018

/Volumes/FB-LIP/MRI/Jacobs/Freesurfer2/Jacobs/avgsubjectT1

\n mri_aparc2aseg --s avgsubjectT1 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /Volumes/Mac/Applications/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --no-relabel \n

/Volumes/Mac/Applications/freesurfer/bin/mri_aparc2aseg: Exec format error. Binary file not executable.

Darwin lip-osx-004040 17.7.0 Darwin Kernel Version 17.7.0: Thu Jun 21 22:53:14 PDT 2018; root:xnu-4570.71.2~1/RELEASE_X86_64 x86_64

recon-all -s avgsubjectT1 exited with ERRORS at Mon Jul 16 17:45:19 CEST 2018

Any help would be appreciated.

Thanks,

Laurel

Laurel Raffington

Postdoctoral Researcher

Center for Lifespan Psychology

Max Planck Institute for Human Development

Lentzeallee 94, 14195 Berlin, Germany

https://www.mpib-berlin.mpg.de/en/staff/laurel-raffington