Dear experts,

 

I’m visualizing a 1st level sig-map together with two specific label files using tksurfer (Freesurfer version 6.0). I’ve extracted those labels before using mri_annotation2label.

I would like to change the colours of the label outlines. This is probably a very simple thing to do, but I am somehow stuck and would appreciate any help.

Here my code:

 

tksurfer Case01 lh inflated \

-tcl my_script.tcl \

-label-outline \

-label ${label_dir}/lh.label1.label\

-label ${label_dir}/lh.label2.label\

-o ${contrast_dir}/contrast1l/sig.nii.gz

 

with the .tcl file containing the following:

labl_set_color 0 0 0 255

labl_set_color 1 0 255 255

make_lateral_view

rotate_brain_x -30

redraw

 

Thanks for your help!

Martin