Thank you, Doug!
One monkey has a pretty decent registration while the other one does not even appear in the window when I try to manually check the registration with this command line:
tkregister --mgz --s MonkeyCelia --fstal --surf orig
It looks like if there is no brain.

2018-03-15 16:57 GMT+01:00 Douglas N. Greve <dgreve@mgh.harvard.edu>:
Check the talairach.xfm registration. It is probably way off. It does
not have to be perfect (esp since they are different species), but the
two subjects should have a similar registration


On 03/14/2018 07:27 PM, Francesca Strappini wrote:
> Both average hemispheres look very bad, they don't even look like a
> brain. The two monkey surfaces look reasonable, except for some
> topological defect that I think could be fixed with some manual
> editing. Is there anything I could try?
>
> Thanks a lot
> Francesca
>
> 2018-03-14 23:41 GMT+01:00 Douglas N. Greve <dgreve@mgh.harvard.edu
> <mailto:dgreve@mgh.harvard.edu>>:
>
>     I don't know what is going on there except that the average
>     surfaces are
>     probably wrong in some way. It looks like it made it all the way
>     through
>     except for that step, so all of the output should be there. How
>     does it
>     look?
>
>
>     On 03/13/2018 05:27 PM, Francesca Strappini wrote:
>     > Dear Experts,
>     >
>     > I'm trying to average two monkey brains. I run this command line:
>     >
>     >  make_average_subject --subjects MonkeyCelia MonkeyCassis --out
>     AVGmonkeys
>     >
>     > but it ended with errors.
>     >
>     > I run the recon-all for both monkyes with the option -notal-check
>     > because I had problems with the Talairach registration. I don't know
>     > if this could be the cause.
>     >
>     > Thanks a lot
>     > Francesca
>     >
>     > Tue Mar 13 20:04:06 CET 2018
>     > /usr/local/freesurfer/subjects/AVGmonkeys
>     > /usr/local/freesurfer/bin/recon-all
>     > -s AVGmonkeys -cortribbon -aparc2aseg
>     > subjid AVGmonkeys
>     > setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
>     > FREESURFER_HOME /usr/local/freesurfer
>     > Actual FREESURFER_HOME /usr/local/freesurfer
>     > build-stamp.txt:
>     freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
>     > Linux shalimpc 4.4.0-116-generic #140-Ubuntu SMP Mon Feb 12 21:23:04
>     > UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
>     > cputime      unlimited
>     > filesize     unlimited
>     > datasize     unlimited
>     > stacksize    8192 kbytes
>     > coredumpsize 0 kbytes
>     > memoryuse    unlimited
>     > vmemoryuse   unlimited
>     > descriptors  1024
>     > memorylocked 64 kbytes
>     > maxproc      63682
>     > maxlocks     unlimited
>     > maxsignal    63682
>     > maxmessage   819200
>     > maxnice      0
>     > maxrtprio    0
>     > maxrttime    unlimited
>     >
>     >               total        used        free shared buff/cache
>     > available
>     > Mem:       16350220     4943572     7520800 278988 3885848
>     > 10739864
>     > Swap:      19528700           0    19528700
>     >
>     > ########################################
>     > program versions used
>     > $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $
>     > $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman
>     Exp $
>     > mri_convert.bin -all-info
>     > ProgramName: mri_convert.bin  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_convert.c,v
>     1.226
>     > 2016/02/26 16:15:24 mreuter Exp $  User: francesca Machine: shalimpc
>     > Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     CompilerName: GCC
>     > CompilerVersion: 40400
>     > FLIRT version 5.5
>     > $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $
>     > mri_convert.bin --version
>     > stable6
>     > ProgramName: tkregister2_cmdl  ProgramArguments: --all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: tkregister2.c,v
>     > 1.132.2.1 2016/08/02 21:17:29 greve Exp $  User: francesca  Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > Program nu_correct, built from:
>     > Package MNI N3, version 1.12.0, compiled by nicks@terrier
>     > (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
>     > ProgramName: mri_make_uchar  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mri_make_uchar.c,v 1.4
>     > 2011/03/02 00:04:14 nicks Exp $  User: francesca Machine: shalimpc
>     > Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_normalize  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_normalize.c,v
>     > 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $  User: francesca 
>     Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_watershed  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_watershed.cpp,v
>     > 1.103 2016/06/17 18:00:49 zkaufman Exp $  User: francesca  Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_gcut  ProgramArguments: -all-info ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02
>     > 00:04:16 nicks Exp $  User: francesca  Machine: shalimpc  Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_segment  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT BuildTimeStamp: Jan 18
>     > 2017 16:38:58  CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27
>     22:24:52
>     > zkaufman Exp $  User: francesca  Machine: shalimpc Platform: Linux
>     > PlatformVersion: 4.4.0-116-generic CompilerName: GCC 
>     CompilerVersion:
>     > 40400
>     > ProgramName: mri_label2label.bin  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_label2label.c,v
>     > 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $  User: francesca 
>     Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_em_register  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_em_register.c,v
>     > 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $  User: francesca
>     > Machine: shalimpc Platform: Linux  PlatformVersion:
>     4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_ca_normalize  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_ca_normalize.c,v
>     > 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $  User: francesca 
>     Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_ca_register  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_ca_register.c,v
>     > 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $  User: francesca 
>     Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_ca_label  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT BuildTimeStamp: Jan 18
>     > 2017 16:38:58  CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27
>     > 22:25:10 zkaufman Exp $  User: francesca  Machine: shalimpc
>     Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_pretess  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mri_pretess.c,v 1.22 2013/08/30
>     > 18:12:25 mreuter Exp $  User: francesca  Machine: shalimpc 
>     Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_fill  ProgramArguments: -all-info ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mri_fill.c,v 1.119 2011/10/25
>     14:09:58
>     > fischl Exp $  User: francesca  Machine: shalimpc Platform: Linux
>     > PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_tessellate  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_tessellate.c,v
>     > 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $  User: francesca 
>     Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $  User:
>     > francesca  Machine: shalimpc Platform: Linux PlatformVersion:
>     > 4.4.0-116-generic CompilerName: GCC CompilerVersion: 40400
>     > ProgramName: mri_normalize_tp2  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mri_normalize_tp2.c,v
>     > 1.8 2011/03/02 00:04:23 nicks Exp $  User: francesca  Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_smooth  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mris_smooth.c,v 1.30 2014/01/21
>     > 18:48:21 fischl Exp $  User: francesca  Machine: shalimpc  Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mris_inflate  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mris_inflate.c,v 1.45 2016/01/20
>     > 23:42:15 greve Exp $  User: francesca  Machine: shalimpc Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mris_curvature  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_curvature.c,v
>     > 1.31 2011/03/02 00:04:30 nicks Exp $  User: francesca  Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_sphere  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mris_sphere.c,v 1.61 2016/01/20
>     > 23:42:15 greve Exp $  User: francesca  Machine: shalimpc  Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mris_fix_topology  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mris_fix_topology.c,v
>     > 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $  User: francesca
>     Machine:
>     > shalimpc  Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_topo_fixer  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mris_topo_fixer.cpp,v
>     > 1.29 2011/03/02 00:04:34 nicks Exp $  User: francesca  Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_ca_label  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mris_ca_label.c,v 1.37
>     > 2014/02/04 17:46:42 fischl Exp $  User: francesca Machine: shalimpc
>     > Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mris_euler_number  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mris_euler_number.c,v
>     > 1.10 2013/01/14 22:39:14 greve Exp $  User: francesca  Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_make_surfaces  ProgramArguments: -all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mris_make_surfaces.c,v
>     > 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $  User: francesca
>     Machine:
>     > shalimpc  Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_register  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     mris_register.c,v 1.63
>     > 2016/01/20 23:43:04 greve Exp $  User: francesca Machine: shalimpc
>     > Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mris_volmask  ProgramArguments: --all-info
>     > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_volmask.cpp,v
>     > 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $  User: francesca 
>     Machine:
>     > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
>     > CompilerName: GCC  CompilerVersion: 40400
>     > ProgramName: mris_anatomical_stats ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ 
>     User:
>     > francesca  Machine: shalimpc  Platform: Linux PlatformVersion:
>     > 4.4.0-116-generic  CompilerName: GCC CompilerVersion: 40400
>     > ProgramName: mrisp_paint  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22
>     > 14:47:57 fischl Exp $  User: francesca  Machine: shalimpc  Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mris_curvature_stats ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $  User:
>     > francesca  Machine: shalimpc Platform: Linux PlatformVersion:
>     > 4.4.0-116-generic CompilerName: GCC CompilerVersion: 40400
>     > ProgramName: mris_calc  ProgramArguments: -all-info ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27
>     > 18:51:28 greve Exp $  User: francesca  Machine: shalimpc Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
>     >
>     > ProgramName: mri_robust_register.bin ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ 
>     User:
>     > francesca  Machine: shalimpc  Platform: Linux PlatformVersion:
>     > 4.4.0-116-generic  CompilerName: GCC CompilerVersion: 40400
>     > $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter
>     Exp $
>     >
>     > ProgramName: mri_robust_template  ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
>     > User: francesca  Machine: shalimpc  Platform: Linux 
>     PlatformVersion:
>     > 4.4.0-116-generic  CompilerName: GCC CompilerVersion: 40400
>     > ProgramName: mri_and  ProgramArguments: -all-info ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13
>     > nicks Exp $  User: francesca  Machine: shalimpc Platform: Linux
>     > PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_or  ProgramArguments: -all-info ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29
>     > lzollei Exp $  User: francesca  Machine: shalimpc Platform: Linux
>     > PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_fuse_segmentations ProgramArguments: -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ 
>     User:
>     > francesca  Machine: shalimpc  Platform: Linux PlatformVersion:
>     > 4.4.0-116-generic  CompilerName: GCC CompilerVersion: 40400
>     > ProgramName: mri_segstats  ProgramArguments: -all-info
>     ProgramVersion:
>     > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT 
>     BuildTimeStamp:
>     > Jan 18 2017 16:38:58  CVS: $Id: mri_segstats.c,v 1.121 2016/05/31
>     > 17:27:11 greve Exp $  User: francesca  Machine: shalimpc Platform:
>     > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
>     > CompilerVersion: 40400
>     > ProgramName: mri_relabel_hypointensities ProgramArguments:
>     -all-info
>     > ProgramVersion: $Name: stable6 $  TimeStamp:
>     2018/03/13-19:04:06-GMT
>     > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
>     > mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks
>     Exp $
>     > User: francesca  Machine: shalimpc  Platform: Linux 
>     PlatformVersion:
>     > 4.4.0-116-generic  CompilerName: GCC CompilerVersion: 40400
>     > #######################################
>     > GCADIR /usr/local/freesurfer/average
>     > GCA RB_all_2016-05-10.vc700.gca
>     > GCASkull RB_all_withskull_2016-05-10.vc700.gca
>     > AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
>     > GCSDIR /usr/local/freesurfer/average
>     > GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
>     > #######################################
>     > #--------------------------------------------
>     > #@# Cortical ribbon mask Tue Mar 13 20:04:06 CET 2018
>     > /usr/local/freesurfer/subjects/AVGmonkeys/mri
>     >
>     >  mris_volmask --aseg_name aseg.presurf --label_left_white 2
>     > --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42
>     > --save_ribbon AVGmonkeys
>     >
>     > SUBJECTS_DIR is /usr/local/freesurfer/subjects
>     > loading input data...
>     > computing distance to left white surface
>     > computing distance to left pial surface
>     > computing distance to right white surface
>     > computing distance to right pial surface
>     >  hemi masks overlap voxels = 34535
>     > writing volume
>     /usr/local/freesurfer/subjects/AVGmonkeys/mri/ribbon.mgz
>     > ERROR: ribbon has non-zero value at location 0,0,0
>     > Linux shalimpc 4.4.0-116-generic #140-Ubuntu SMP Mon Feb 12 21:23:04
>     > UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
>     >
>     > recon-all -s AVGmonkeys exited with ERRORS at Tue Mar 13
>     20:26:58 CET 2018
>     >
>     > To report a problem, see
>     > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     >
>     >
>     > --
>     > Francesca Strappini, Ph.D.
>     > Neurobiology Department
>     > Weizmann Institute of Science
>     > 234 Herzl Street, Rehovot 7610001 Israel
>     > Tel.: +972 58 444 2584 <tel:%2B972%2058%20444%202584>
>     > E-mail: francesca.strappini@weizmann.ac.il
>     <mailto:francesca.strappini@weizmann.ac.il>
>     > <mailto:francesca.strappini@weizmann.ac.il
>     <mailto:francesca.strappini@weizmann.ac.il>>
>     >
>     >
>     > _______________________________________________
>     > Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
>     _______________________________________________
>     Freesurfer mailing list
>     Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
>
>     The information in this e-mail is intended only for the person to
>     whom it is
>     addressed. If you believe this e-mail was sent to you in error and
>     the e-mail
>     contains patient information, please contact the Partners
>     Compliance HelpLine at
>     http://www.partners.org/complianceline
>     <http://www.partners.org/complianceline> . If the e-mail was sent
>     to you in error
>     but does not contain patient information, please contact the
>     sender and properly
>     dispose of the e-mail.
>
>
>
>
> --
> Francesca Strappini, Ph.D.
> Neurobiology Department
> Weizmann Institute of Science
> 234 Herzl Street, Rehovot 7610001 Israel
> Tel.: +972 58 444 2584
> E-mail: francesca.strappini@weizmann.ac.il
> <mailto:francesca.strappini@weizmann.ac.il>
>
>
> _______________________________________________
> Freesurfer mailing list
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
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--
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strappini@weizmann.ac.il