Dear all,

I'm learning  how to work with Freesurfer on a #PBS/Torque  HPC cluster. There is enough documentation about using #PBS, but I have not been able to find anything on the net about how to process multiple subjects in FS in this environment.

If somebody is willing to share an example script that would be most helpful.

Am I right in thinking that by using the "-itkthreads" flag FS can make use of multiple threads but not use multiple cores ?

The nodes use two Xeon processors with 8 cores and 16 threads per CPU and have 64 GB per node.  I have to book per node so the more I can use it the better.

Regards

Joost Riphagen