INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Linux-centos5_x86_64-stable-pub-v5.0.0
Current Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
INFO: SUBJECTS_DIR is /projects/d20277/dek/done/analyzed
Actual FREESURFER_HOME /projects/d20277/software/freesurfer
-rwxrwxrwx 1 drg d20277 544010 Sep 19 11:56 /projects/d20277/dek/done/analyzed/3300/scripts/recon-all.log
Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
INFO: current FREESURFER_HOME does not match that of previous processing.
Current: /projects/d20277/software/freesurfer
Previous: /usr/local/freesurfer
/projects/d20277/dek/done/analyzed/3300/surf
#--------------------------------------------
#@# Qdec Cache lh thickness fsaverage Wed Sep 19 13:47:32 CDT 2012
mris_preproc --s 3300 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh
nsubjects = 1
tmpdir is ./tmp.mris_preproc.5628
/projects/d20277/dek/done/analyzed/3300/surf
Log file is lh.thickness.fsaverage.mris_preproc.log
Wed Sep 19 13:47:32 CDT 2012
setenv SUBJECTS_DIR /projects/d20277/dek/done/analyzed
cd /projects/d20277/dek/done/analyzed/3300/surf
/projects/d20277/software/freesurfer/bin/mris_preproc --s 3300 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh
Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.59.2.1 2011/05/17 03:42:01 greve Exp $
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
tmpdir is ./tmp.mris_preproc.5628
Src lh sphere.reg
Trg lh sphere.reg
---------------------------------------------------
#@# 1/1 3300 Wed Sep 19 13:47:32 CDT 2012 --------------
-----------------------
mri_surf2surf --srcsubject 3300 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.5628/3300.1.mgh --sval /projects/d20277/dek/done/analyzed/3300/surf/lh.thickness --sfmt curv --noreshape --no-cortex
Source registration surface changed to sphere.reg
Target registration surface changed to sphere.reg
srcsubject = 3300
srcval = /projects/d20277/dek/done/analyzed/3300/surf/lh.thickness
srctype = curv
trgsubject = fsaverage
trgval = ./tmp.mris_preproc.5628/3300.1.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/3300/surf/lh.sphere.reg
Loading source data
Reading curvature file /projects/d20277/dek/done/analyzed/3300/surf/lh.thickness
Reading target surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Done
Mapping Source Volume onto Source Subject Surface
surf2surf_nnfr: building source hash (res=16).
Surf2Surf: Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16).
Surf2Surf: Reverse Loop (147148)
Reverse Loop had 31096 hits
Surf2Surf: Dividing by number of hits (163842)
INFO: nSrcLost = 0
nTrg121 = 141358, nTrgMulti = 22484, MnTrgMultiHits = 2.38303
nSrc121 = 110958, nSrcLost = 0, nSrcMulti = 36190, MnSrcMultiHits = 2.32053
Saving target data
Saving to ./tmp.mris_preproc.5628/3300.1.mgh
-----------------------
mri_concat ./tmp.mris_preproc.5628/3300.1.mgh --o lh.thickness.fsaverage.mgh
ninputs = 1
Checking inputs
nframestot = 1
Allocing output
Done allocing
nframes = 1
Writing to lh.thickness.fsaverage.mgh
Cleaning up
-----------------------
rm -r ./tmp.mris_preproc.5628
Wed Sep 19 13:47:41 CDT 2012
mris_preproc done
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh thickness fwhm0 fsaverage Wed Sep 19 13:47:41 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 0 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm0.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.thickness.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.thickness.fwhm0.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Saving target data
Saving to lh.thickness.fwhm0.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh thickness fwhm5 fsaverage Wed Sep 19 13:47:44 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 5 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm5.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.thickness.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.thickness.fwhm5.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 5
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 5.000000,
std = 2.123305, with 18 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 18
Saving target data
Saving to lh.thickness.fwhm5.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh thickness fwhm10 fsaverage Wed Sep 19 13:47:51 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 10 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm10.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.thickness.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.thickness.fwhm10.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 10
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 10.000000,
std = 4.246609, with 74 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 74
Saving target data
Saving to lh.thickness.fwhm10.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh thickness fwhm15 fsaverage Wed Sep 19 13:48:03 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 15 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm15.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.thickness.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.thickness.fwhm15.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 15
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 15.000000,
std = 6.369914, with 165 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 165
Saving target data
Saving to lh.thickness.fwhm15.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh thickness fwhm20 fsaverage Wed Sep 19 13:48:18 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 20 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm20.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.thickness.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.thickness.fwhm20.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 20
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 20.000000,
std = 8.493218, with 294 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 294
Saving target data
Saving to lh.thickness.fwhm20.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh thickness fwhm25 fsaverage Wed Sep 19 13:48:42 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 25 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm25.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.thickness.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.thickness.fwhm25.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 25
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 25.000000,
std = 10.616523, with 460 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 460
Saving target data
Saving to lh.thickness.fwhm25.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fsaverage Wed Sep 19 13:49:16 CDT 2012
mris_preproc --s 3300 --hemi lh --meas area --target fsaverage --out lh.area.fsaverage.mgh
nsubjects = 1
tmpdir is ./tmp.mris_preproc.6093
/projects/d20277/dek/done/analyzed/3300/surf
Log file is lh.area.fsaverage.mris_preproc.log
Wed Sep 19 13:49:17 CDT 2012
setenv SUBJECTS_DIR /projects/d20277/dek/done/analyzed
cd /projects/d20277/dek/done/analyzed/3300/surf
/projects/d20277/software/freesurfer/bin/mris_preproc --s 3300 --hemi lh --meas area --target fsaverage --out lh.area.fsaverage.mgh
Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.59.2.1 2011/05/17 03:42:01 greve Exp $
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
tmpdir is ./tmp.mris_preproc.6093
Src lh sphere.reg
Trg lh sphere.reg
---------------------------------------------------
#@# 1/1 3300 Wed Sep 19 13:49:17 CDT 2012 --------------
-----------------------
mri_surf2surf --srcsubject 3300 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.6093/3300.1.mgh --sval /projects/d20277/dek/done/analyzed/3300/surf/lh.area --sfmt curv --noreshape --no-cortex
Source registration surface changed to sphere.reg
Target registration surface changed to sphere.reg
srcsubject = 3300
srcval = /projects/d20277/dek/done/analyzed/3300/surf/lh.area
srctype = curv
trgsubject = fsaverage
trgval = ./tmp.mris_preproc.6093/3300.1.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/3300/surf/lh.sphere.reg
Loading source data
Reading curvature file /projects/d20277/dek/done/analyzed/3300/surf/lh.area
Reading target surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Done
Mapping Source Volume onto Source Subject Surface
surf2surf_nnfr: building source hash (res=16).
Surf2Surf: Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16).
Surf2Surf: Reverse Loop (147148)
Reverse Loop had 31096 hits
Surf2Surf: Dividing by number of hits (163842)
INFO: nSrcLost = 0
nTrg121 = 141358, nTrgMulti = 22484, MnTrgMultiHits = 2.38303
nSrc121 = 110958, nSrcLost = 0, nSrcMulti = 36190, MnSrcMultiHits = 2.32053
Saving target data
Saving to ./tmp.mris_preproc.6093/3300.1.mgh
-----------------------
mri_concat ./tmp.mris_preproc.6093/3300.1.mgh --o lh.area.fsaverage.mgh
ninputs = 1
Checking inputs
nframestot = 1
Allocing output
Done allocing
nframes = 1
Writing to lh.area.fsaverage.mgh
Cleaning up
-----------------------
rm -r ./tmp.mris_preproc.6093
Wed Sep 19 13:49:25 CDT 2012
mris_preproc done
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fwhm0 fsaverage Wed Sep 19 13:49:25 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 0 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm0.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.fwhm0.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Saving target data
Saving to lh.area.fwhm0.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fwhm5 fsaverage Wed Sep 19 13:49:28 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 5 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm5.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.fwhm5.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 5
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 5.000000,
std = 2.123305, with 18 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 18
Saving target data
Saving to lh.area.fwhm5.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fwhm10 fsaverage Wed Sep 19 13:49:34 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 10 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm10.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.fwhm10.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 10
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 10.000000,
std = 4.246609, with 74 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 74
Saving target data
Saving to lh.area.fwhm10.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fwhm15 fsaverage Wed Sep 19 13:49:45 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 15 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm15.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.fwhm15.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 15
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 15.000000,
std = 6.369914, with 165 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 165
Saving target data
Saving to lh.area.fwhm15.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fwhm20 fsaverage Wed Sep 19 13:50:00 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 20 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm20.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.fwhm20.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 20
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 20.000000,
std = 8.493218, with 294 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 294
Saving target data
Saving to lh.area.fwhm20.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area fwhm25 fsaverage Wed Sep 19 13:50:25 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 25 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm25.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.fwhm25.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 25
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 25.000000,
std = 10.616523, with 460 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 460
Saving target data
Saving to lh.area.fwhm25.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fsaverage Wed Sep 19 13:51:00 CDT 2012
mris_preproc --s 3300 --hemi lh --meas area.pial --target fsaverage --out lh.area.pial.fsaverage.mgh
nsubjects = 1
tmpdir is ./tmp.mris_preproc.6506
/projects/d20277/dek/done/analyzed/3300/surf
Log file is lh.area.pial.fsaverage.mris_preproc.log
Wed Sep 19 13:51:00 CDT 2012
setenv SUBJECTS_DIR /projects/d20277/dek/done/analyzed
cd /projects/d20277/dek/done/analyzed/3300/surf
/projects/d20277/software/freesurfer/bin/mris_preproc --s 3300 --hemi lh --meas area.pial --target fsaverage --out lh.area.pial.fsaverage.mgh
Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.59.2.1 2011/05/17 03:42:01 greve Exp $
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
tmpdir is ./tmp.mris_preproc.6506
Src lh sphere.reg
Trg lh sphere.reg
---------------------------------------------------
#@# 1/1 3300 Wed Sep 19 13:51:00 CDT 2012 --------------
-----------------------
mri_surf2surf --srcsubject 3300 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.6506/3300.1.mgh --sval /projects/d20277/dek/done/analyzed/3300/surf/lh.area.pial --sfmt curv --noreshape --no-cortex
Source registration surface changed to sphere.reg
Target registration surface changed to sphere.reg
srcsubject = 3300
srcval = /projects/d20277/dek/done/analyzed/3300/surf/lh.area.pial
srctype = curv
trgsubject = fsaverage
trgval = ./tmp.mris_preproc.6506/3300.1.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/3300/surf/lh.sphere.reg
Loading source data
Reading curvature file /projects/d20277/dek/done/analyzed/3300/surf/lh.area.pial
Reading target surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Done
Mapping Source Volume onto Source Subject Surface
surf2surf_nnfr: building source hash (res=16).
Surf2Surf: Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16).
Surf2Surf: Reverse Loop (147148)
Reverse Loop had 31096 hits
Surf2Surf: Dividing by number of hits (163842)
INFO: nSrcLost = 0
nTrg121 = 141358, nTrgMulti = 22484, MnTrgMultiHits = 2.38303
nSrc121 = 110958, nSrcLost = 0, nSrcMulti = 36190, MnSrcMultiHits = 2.32053
Saving target data
Saving to ./tmp.mris_preproc.6506/3300.1.mgh
-----------------------
mri_concat ./tmp.mris_preproc.6506/3300.1.mgh --o lh.area.pial.fsaverage.mgh
ninputs = 1
Checking inputs
nframestot = 1
Allocing output
Done allocing
nframes = 1
Writing to lh.area.pial.fsaverage.mgh
Cleaning up
-----------------------
rm -r ./tmp.mris_preproc.6506
Wed Sep 19 13:51:09 CDT 2012
mris_preproc done
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fwhm0 fsaverage Wed Sep 19 13:51:09 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 0 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm0.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.pial.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.pial.fwhm0.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Saving target data
Saving to lh.area.pial.fwhm0.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fwhm5 fsaverage Wed Sep 19 13:51:11 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 5 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm5.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.pial.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.pial.fwhm5.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 5
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 5.000000,
std = 2.123305, with 18 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 18
Saving target data
Saving to lh.area.pial.fwhm5.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fwhm10 fsaverage Wed Sep 19 13:51:18 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 10 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm10.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.pial.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.pial.fwhm10.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 10
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 10.000000,
std = 4.246609, with 74 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 74
Saving target data
Saving to lh.area.pial.fwhm10.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fwhm15 fsaverage Wed Sep 19 13:51:29 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 15 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm15.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.pial.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.pial.fwhm15.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 15
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 15.000000,
std = 6.369914, with 165 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 165
Saving target data
Saving to lh.area.pial.fwhm15.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fwhm20 fsaverage Wed Sep 19 13:51:45 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 20 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm20.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.pial.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.pial.fwhm20.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 20
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 20.000000,
std = 8.493218, with 294 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 294
Saving target data
Saving to lh.area.pial.fwhm20.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh area.pial fwhm25 fsaverage Wed Sep 19 13:52:09 CDT 2012
mri_surf2surf --s fsaverage --hemi lh --fwhm 25 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm25.fsaverage.mgh --cortex
srcsubject = fsaverage
srcval = lh.area.pial.fsaverage.mgh
srctype =
trgsubject = fsaverage
trgval = lh.area.pial.fwhm25.fsaverage.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 25
label-src = (null)
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/fsaverage/surf/lh.sphere.reg
Loading source data
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 25.000000,
std = 10.616523, with 460 iterations of nearest-neighbor smoothing
Reading smoothing mask label lh.cortex.label
NN smoothing output with n = 460
Saving target data
Saving to lh.area.pial.fwhm25.fsaverage.mgh
rm: No match.
#--------------------------------------------
#@# Qdec Cache lh volume fsaverage Wed Sep 19 13:52:44 CDT 2012
mris_preproc --s 3300 --hemi lh --meas volume --target fsaverage --out lh.volume.fsaverage.mgh
nsubjects = 1
tmpdir is ./tmp.mris_preproc.6938
/projects/d20277/dek/done/analyzed/3300/surf
Log file is lh.volume.fsaverage.mris_preproc.log
Wed Sep 19 13:52:44 CDT 2012
setenv SUBJECTS_DIR /projects/d20277/dek/done/analyzed
cd /projects/d20277/dek/done/analyzed/3300/surf
/projects/d20277/software/freesurfer/bin/mris_preproc --s 3300 --hemi lh --meas volume --target fsaverage --out lh.volume.fsaverage.mgh
Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.59.2.1 2011/05/17 03:42:01 greve Exp $
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
tmpdir is ./tmp.mris_preproc.6938
Src lh sphere.reg
Trg lh sphere.reg
---------------------------------------------------
#@# 1/1 3300 Wed Sep 19 13:52:44 CDT 2012 --------------
-----------------------
mri_surf2surf --srcsubject 3300 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.6938/3300.1.mgh --sval /projects/d20277/dek/done/analyzed/3300/surf/lh.volume --sfmt curv --noreshape --no-cortex
Source registration surface changed to sphere.reg
Target registration surface changed to sphere.reg
srcsubject = 3300
srcval = /projects/d20277/dek/done/analyzed/3300/surf/lh.volume
srctype = curv
trgsubject = fsaverage
trgval = ./tmp.mris_preproc.6938/3300.1.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg /projects/d20277/dek/done/analyzed/3300/surf/lh.sphere.reg
Loading source data
Reading curvature file /projects/d20277/dek/done/analyzed/3300/surf/lh.volume
ERROR: number of vertices in /projects/d20277/dek/done/analyzed/3300/surf/lh.volume does not match surface (145332,147148)
ERROR: reading curvature file
Linux quser01 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 3300 exited with ERRORS at Wed Sep 19 13:52:46 CDT 2012