Dear all, 

I'm would like to run a hippocampal segmentation on my data.

However, I'm a beginner with freesurfer thus, I juste try to run the commands with subject training data.

I first try to run commands following the recent development (https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala). However, terminal says that the command segmentHA.sh doesn't exist. 

I guess that it could be linked to the fact that I used bash in Windows but I can't find a way to check this..;

Any idea ? 

Regards, 

Alexandre