Hi Doug,
Thank you for prompt reply.
So I should remove '-gammafit', and add '-fir 4 24' is for mkanalysis-sess.new?
Yang
If you want a time course, you should use an FIR model, something like "-fir 4 24" to start the time window 4 sec before the stimulus onset and stop it 20 sec after stimulus onset. Do not include -gammafit.
doug
Yang Liu wrote:
------------------------------------------------------------------------Hi all,
I want to plot the hemodynamic response of a voxel after my analysis finishes. I hope I can get the hemodynamic response of each voxel for each session, so I can see the statistics by myself.
My analysis.cfg is below:
-gammafit 0 8
-gammaexp 0.3
-timewindow 40.0000
-prestim 0
-polyfit 2
-TER 2.0000
-autowhiten 40
-nskip 0
-fwhm 0
-extreg mcextreg
-nextreg 3
-rescale 1000
After I ran selxavg-sess, I got the following volumes: h0.nii, h0-offset.nii, h.nii, h-offset.nii, rstd.nii, rvar.nii.
How can I get a response from these volumes?
Yang
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.