Dear experts,

This is a follow-up question from my previous post. 

http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg47287.html

If I am running stats with my own stats code to generate p-values and other parameters, what other files 

do I need to generate in order to run 'mri_glmfit-sim'? I do not have the glmdir file (since I am not running mri_glmfit) so I would like to know which files need to be supplied with which flag/option, in place of the '--glmdir', for mri_glmfit-sim to run the cluster-based correction for my vector of p-values. An example command would be extremely helpful. Thank you in advance!

Best,

Yoon