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Hello FreeSurfer Developers,

I'm attempting to compute cortical thickness and to analyze it between groups.

So I perform "recon-all", but rather than using recon-all -all, some problems arise while performing each of the steps in it. These problems are as follwing.

1.  By perform "Curvature Stats" of recon-all in parallel, This process is required for ?h.curv file. This file is created after -white or -whitesurf process, but looking at recon-all file in /usr/local/freesurfer/bin/, -whitesurf is running after this process, so I think so, Is it correct to move position of curvature stats after the pialsurf to fix the error?

2. Looking at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable and recon-all file, because order of autorecon -all is different between two reference, I am confused. Can you please tell me which one to refer to?

1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
2) Platform: Ubuntu release 18.04.1
3) uname -a: Linux LABPC 5.4.0-70-generic #78~18.04.1-Ubuntu SMP Sat Mar 20 14:10:07 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached

Thank you very much.

Sincerely,

Yoonho

--

Hwang, Yoonho

Medical Image Processing Laboratory (MIPL),

Department of Biomedical Engineering, Yonsei University.

#218 Sanhak-Kwan, 1, Yeonsedae-gil, Heungeop-myeon, Wonju,

Gangwon-do, 26493, Republic of Korea.

Office: +82-33-760-2499

Email: ken.lmstar11@gmail.com

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