On Feb 8, 2017, at 10:38 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

can you run the commands below and tell me what happens?

cd /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf
ln -s lh.white.preaparc.H lh.white.H


On 02/08/2017 09:44 AM, Taylor Hilton wrote:

Apologies, that was an old log, attaching the relevant one here.

On Feb 7, 2017, at 6:02 PM, Douglas Greve <greve@nmr.mgh.harvard.edu 
<mailto:greve@nmr.mgh.harvard.edu>> wrote:

According to the log file, the error is that you need a new license:

GNU libc version: 2.23
ERROR: Systems running GNU glibc version greater than 2.15
require a newly formatted license file (it's free). Please
download a new one from the following page:
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On 2/7/17 12:49 PM, Taylor Hilton wrote:

Yes I’ll attach it here.  I’m using a linux server(Ubuntu).

On Feb 7, 2017, at 12:32 PM, Douglas Greve 
<greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

Can you send the full recon-all.log? What platform are you running on?


On 2/7/17 11:19 AM, Taylor Hilton wrote:

Hi all,

Having trouble with an error running "recon-all -subjid ${i} 
-autorecon2” across all subjects.

Below is where it has the error in recon-all.log.  We also tried 
running the last command (“ln -s …”) manually and got the error 
“ln: failed to create symbolic link ‘lh.white.H’: Operation not 
supported.” whereas the rest of the commands ran normally.

#--------------------------------------------
#@# Curv .H and .K lh Tue Feb  7 07:29:43 EST 2017
/home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf

mris_curvature -w lh.white.preaparc

total integrated curvature = 18.936*4pi (237.960) --> -18 handles
ICI = 230.2, FI = 1697.2, variation=29040.790
writing Gaussian curvature to ./lh.white.preaparc.K...done.
writing mean curvature to ./lh.white.preaparc.H...done.
rm -f lh.white.H
ln -s lh.white.preaparc.H lh.white.H
Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 
2017 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s 10007 exited with ERRORS at Tue Feb  7 07:29:46 EST 2017

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————————————————————————————————————————————————


We also tried the solution laid out in this thread with no luck:
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Any help is very appreciated!

- B. Taylor Hilton
Lab Data Coordinator, University of Pittsburgh






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-- 
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MGH-NMR Center
greve@nmr.mgh.harvard.edu
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