You can use aparcstats2table to report the thickness, surface area, and
volume as a table from a group of subjects. Is that what you want?


On 03/13/2017 02:01 AM, Duy Nguyen wrote:
> Dear FreeSurfer expert
>
> I wonder that whether I can use the command aparc2statstable to get
> the cortical thickness or is it better to get the cortical thickness
> of a volume defined ROI or is there the easy way to get the most
> accurate cortical thickness from ROI
>
> I am following the pipeline "VolumeRoiCorticalThickness" but I do not
> understand how I can get ROI mask called ROI5.nii and TT_avg152T1.nii.
>
> Sorry if this question is too obvious for me to overlook something.
> Any help is appreciated since I am newbie on FreeSurfer.
> Best regards,
> *--v-- Peace --v--*
> *Duy Nguyễn *
> *Biomedical Engineering Department- IU HCMC*
> *Cell: (+84)909999056*
> *Email: duy.nguyenbme@gmail.com <mailto:duy.nguyenbme@gmail.com>*
>
>
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