Try this Greg:

1. Convert the brain.mgz volume to analyze:
     mri_convert $SUBJECTS_DIR/subjectname/mri/brain.mgz brain.img
2. Align brain.img with your functional data in spm (eg, func.img)
3. Create your spm statistical output (eg, t.img)
4. Create the registration file:
     tkregister2 --s subjectname --mov func.img \
       --regheader --reg  register.dat --surf orig

   This will bring up the tkregister window with the orig volume. Hit
   the "Compare" button to see the functional. The green line will be
   the surface. Make sure the alignment is good (ie, the green line
   follows the bright intensity patterns in the functional). Hit the
   "Save" button to save the registration.  This will create a file
   called register.dat.
5. View your functional data in the volume:
     tkmedit subjectname orig.mgz -overlay t.img -overlay-reg register.dat
6. View your functional data on the surface:
     tksurfer subjectname lh inflated -overlay t.img -overlay-reg register.dat

Notes:
1. This might not work very well if you've used the non-linear
registration


Kirk, Gregory wrote:
Message
Hi, I think this is one for Doug,
 
Thomas Witzel told me it is possible to resample the volume activation data from
spm2 onto the cortical surface generated with freesurfer. Is their a blurb around that details the process
or could you give me some instructions.
 
thanks
 
Greg.

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