External Email - Use Caution        

Hello FreeSurfer Developers,

I ran a recon-all on a recent batch of T1 Nifti files and all ended with “exited with ERRORS”. For example: “recon-all -s Chan_Pui_Kim_42M_T1 exited with ERRORS at Sat Jan 11 01:32:55 HKT 2020”.

I've searched the email archive list and I found other researcher encountered same problem before. However, I am quite sure their root causes are not same as my case. 3 possible causes were found in the email archive which about “exited with ERRORS”:

1. The version of freesurfer (I have already used the latest 6.0.0 version)
2. Hard disk space (My computer have enough hard disk space)
3. sharing folder between virtual machine and original platform. (I use freesurfer in Mac OS which do not have this problem)

I uploaded the recon-all.log to my dropbox in case it's of any use.

1) FreeSurfer version: Darwin-OSX-stable-pub-v6.0.0-2beb96c

2) Platform: MAC OS X 10.11.6

3) uname -a: Darwin PFCs-MacBook-Pro.local 15.6.0 Darwin Kernel Version 15.6.0: Thu Jun 21 20:07:40 PDT 2018; root:xnu-3248.73.11~1/RELEASE_X86_64 x86_64

4) recon-all.log, please download at: 

https://www.dropbox.com/s/bxb2vyhz3koo83s/recon-all.log-%20Terminal%20Output%20log%2020%20Jan%202020%20.txt?dl=0

Regards

Frank

---------------------------

FRANK  C Y CHAU

Research assistant 

Division of Neurology

Department of Medicine

Tel: +852 6340 2553

Fax: 2872 5828

E-mail : cyfrank@hku.hk

Rm 304, 3/F, New Clinical building, Queen Mary Hospital, 102 Pokfulam Road, Hong Kong