I am sorry, but I still struggle to make it work :(
Here is my syntax:
mri_cor2label --i my_Analyze_mask.nii --l ./freeSurferMask.label
I am getting "ERROR: must supply a label id" error message.
I do not have any label id, because it's my custom mask, which was created in the SPM.

On Fri, Apr 9, 2010 at 11:14 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
It will still work.

from mri_cor2label --help :

Note: the name of this program is a bit misleading as it will operate
on anything readble by mri_convert (eg, mgz, mgh, nifti, bhdr,
analyze, etc).


John Gelburg wrote:
thanks, but isn't COR volume and my ANALYZE image is not the same thing?

On Fri, Apr 9, 2010 at 8:02 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

   try mri_cor2label

   John Gelburg wrote:

       Hi,

       I have ANLYZE binary mask which I would like to convert to
       FreeSurfer labels. Is there any more automatic way to do it
       than loading it as an overlay and then selecting manually as a
       label?

       Thanks for help,
       John
       ------------------------------------------------------------------------

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   --     Douglas N. Greve, Ph.D.
   MGH-NMR Center
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html