Hi Rafa

this doesn't look like the whole subject dir, just some files from it (e.g. no mri/transforms/talairach.xfm). Don't email it to me - use our ftp site

cheers
Bruce
On Tue, 4 Jun 2013, Rafa X wrote:

Hi Bruce,Thanks for your reply. I have attached the zipped subject dir (please, note that I had to compress it twice for sending

problems).
Rafa.


2013/6/4 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
      Hi Rafa

      that sounds like a bug. Can you gzip and upload the whole subject dir?

      cheers
      Bruce
      On Tue, 4 Jun 2013, Rafa X wrote:

            Dear freesurfer experts,

            I was running an autorecon2 in the recon-all but always gives me this memory allocation error, only on
            this
            subject. Im using FS v5.1



            #@# ASeg Stats Mon Jun  3 20:13:11 CEST 2013
            /root/trabajo/freesurfer/subjects/qsm1_17_stats2_g

             mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0
            --excl-ctxgmwm
            --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv
            --surf-wm-vol --surf-ctx-vol --totalgray --ctab /root/trabajo/freesurfer/ASegStatsLUT.txt --subject
            qsm1_17_stats2_g


            $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $
            cwd
            cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0
            --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units
            MR
            --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /root/trabajo/freesurfer/ASegStatsLUT.txt
            --subject
            qsm1_17_stats2_g
            sysname  Linux
            hostname localhost.localdomain
            machine  x86_64
            user     root
            atlas_icv (eTIV) = 1196346 mm^3    (det: 1.628380 )
            Loading mri/aseg.mgz
            Getting Cerebral WM volumes from surface
            lh white matter volume 206011
            rh white matter volume 198149
            Getting Cerebral GM and WM volumes from surfaces
            lh surface-based volumes (mm3): wTot = 235659.045132,  pTot = 416409.266434 c = 180750.221302
            rh surface-based volumes (mm3): wTot = 223785.748405,  pTot = 402494.420361 c = 178708.671956
            MRIalloc: could not allocate 540094766 frames

            Computing SupraTentVolCor
            Cannot allocate memory
            Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006 x86_64 x86_64 x86_64
            GNU/Linux

            recon-all -s qsm1_17_stats2_g exited with ERRORS at Mon Jun  3 20:18:36 CEST 2013

            For more details, see the log file
            /root/trabajo/freesurfer/subjects/qsm1_17_stats2_g/scripts/recon-all.log
            To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting



            Any help will be appreaciated,

            Many thanks in advance
            Rafa




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