Hi,

I haven't had a reply to my question about failed TRACULA reconstructions of the corpus callosum forceps major.  Is anyone able to offer some advice on this?  I have looked through previous postings and tried some suggestions, but they didn't work.

Thanks.

Best wishes,
Clare


From: Gibbard, Clare
Sent: 14 September 2012 16:00
To: freesurfer@nmr.mgh.harvard.edu
Subject: TRACULA - failed corpus callosum forceps major

Hello,

I have tried out running TRACULA on 20 subjects.  It all seemed to work well except that in 8 of the subjects the corpus callosum forceps major was either missing or was a very small cluster.  The same happened for the temporal SLF of 2 subjects.

I read previous posts related to this and tried re-running the affected subjects with set reinit =1.  However, the results were very similar to before.  I have checked the registrations and they are not perfect, but not wildly inaccurate.

Are you able to suggest any options for me to try?  I have attached the dmrirc file I used for the first run (called dmrirc-original) as well as the one for re-running the subjects whose CC was not segmented (called dmrirc).

Thank you.

Best wishes,
Clare