Hi freesurfer gurus
We are trying to preprocess of Tutorial fMRI Data.
Following Freesurfer wiki,we adhered to hierarchy and type ' preproc-sess -s mgh-101.1 -fwhm 5'.
But the following Error was displayed.
*******************************************************************************************
[root@localhost my-study]# preproc-sess -s mgh-101.1 -fwhm 5
--------------------------------------------------------------
preproc-sess logfile is log/preproc-sess.log
--------------------------------------------------------------
instem f
mc 1 f fmc
stc 0 fmc
sm 1 fmc fmcsm5
mask 1 brain
mgh-101.1 MC -----------------------------
2009年 9月 3日 木曜日 13:46:33 JST
/usr/local/freesurfer/fsfast-tutorial/my-study
mc-sess -fstem f -fmcstem fmc -s mgh-101.1 -d /usr/local/freesurfer/fsfast-tutorial/my-study -fsd bold -new -update -no-inorm
----------------------------------------
Logfile is /usr/local/freesurfer/fsfast-tutorial/my-study/log/mc-mgh-101.1-bold.log
-------------------------------------------
/usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1
RunList: 003 005 007 010
Targ Stem is 003/f
------- ************************** -----------
------- Motion Correcting Run 003 -----------
------- ************************** -----------
sess = mgh-101.1
2009年 9月 3日 木曜日 13:46:34 JST
mc-afni2 --i 003/f.nii --t 003/f.nii --frame 0 --o 003/fmc.nii --mcdat 003/fmc.mcdat
/usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold
mri_info --nframes --o /tmp/mriinfo.12296 003/f.nii
log file is 003/fmc.nii.mclog
mcdat file is 003/fmc.mcdat
tmp dir is 003/tmp.mc-afni2.12296
#@# --------------------------------
/usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold
mri_convert 003/f.nii 003/tmp.mc-afni2.12296/tempvol.nii.gz --nskip 0 --ndrop 84 -odt float
mri_convert 003/f.nii 003/tmp.mc-afni2.12296/tempvol.nii.gz --nskip 0 --ndrop 84 -odt float
nskip = 0
ndrop = 84
$Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $
reading from 003/f.nii...
TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.9973, -0.0712038, 0.0179835)
j_ras = (0.0625429, -0.951817, -0.300222)
k_ras = (0.038494, -0.298286, 0.9537)
changing data type from 4 to 3 (noscale = 0)...
Dropping last 84 frames
writing to 003/tmp.mc-afni2.12296/tempvol.nii.gz...
#@# --------------------------------
/usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold
mri_convert 003/f.nii 003/tmp.mc-afni2.12296/invol.nii.gz -odt float
mri_convert 003/f.nii 003/tmp.mc-afni2.12296/invol.nii.gz -odt float
$Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $
reading from 003/f.nii...
TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.9973, -0.0712038, 0.0179835)
j_ras = (0.0625429, -0.951817, -0.300222)
k_ras = (0.038494, -0.298286, 0.9537)
changing data type from 4 to 3 (noscale = 0)...
writing to 003/tmp.mc-afni2.12296/invol.nii.gz...
#@# --------------------------------
/usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold
3dvolreg -verbose -dfile 003/fmc.mcdat -base 003/tmp.mc-afni2.12296/tempvol.nii.gz -prefix 003/tmp.mc-afni2.12296/outvol.nii.gz 003/tmp.mc-afni2.12296/invol.nii.gz
3dvolreg: error while loading shared libraries: libXp.so.6: cannot open shared object file: No such file or directory
ERROR: 3dvolreg
ERROR: mc-sess failed
************************************************************************************************
If we need to download AFNI(or 3dvolreg),where should we put them(or 3dvolreg)?
Please give us your suggestion.
Thank you
Kenta
--
卯野賢太
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早稲田大学 スポーツ科学研究科
修士課程1年 卯野賢太
早稲田大学 フロンティアリサーチセンター
所沢キャンパス 110号館
〒359-1165 所沢市堀之内135-1
TEL:04-2947-6809 (内田研究室)
unokentauno@gmail.com
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