Stefano

----Messaggio originale----
Da: greve@nmr.mgh.harvard.edu
Data: 3-ott-2014 22.03
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] mri_binarize error

does that file exist and do you have read permissions?

On 10/03/2014 04:02 PM, stdp82@virgilio.it wrote:
> Hi list
>
> I'm running
>
> mri_binarize --i aparc+aseg.mgz --match 1005 1008 1010 1025 1029 1031
> --o lh.parietal.nii.gz
>
> and I get this error:
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /Applications/freesurfer/subjects/Control20
> cmdline mri_binarize --i aparc+aseg.mgz --match 1005 1008 1010 1025
> 1029 1031 --o lh.parietal.nii.gz
> sysname Darwin
> hostname iMac-di-Stefano.local
> machine x86_64
> user     Stefano
>
> input      aparc+aseg.mgz
> frame      0
> nErode3d   0
> nErode2d   0
> output     lh.parietal.nii.gz
> Binarizing based on matching values
> nMatch 6
> 0 1005
> 1 1008
> 2 1010
> 3 1025
> 4 1029
> 5 1031
> binval        1
> binvalnot     0
> mghRead(/Applications/freesurfer/subjects//Control20/aparc+aseg.mgz,
> -1): could not open file
>
> Thanks
>
> Regards,
>
> Stefano
>
>
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> Freesurfer@nmr.mgh.harvard.edu
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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