Hi Shani, what is fs_read_dat.m? I've never seen it before. Why do you
need to transform the surface? What are you using to create the display
below (ie, command line)?
doug

On 01/31/2013 10:53 AM, Shani Ben Amitay wrote:
> Dear freesurfers
> I used bbregister to coregister diffusion images with anatomical.
> I would like to apply the bbregistration transformation to the white
> and pial surfaces
> What I've done is:
> I calculated new transformation  matrix using fs_read_dat.m and then
> apply it to the surfaces with mri_surf2surf.
> When overlaying the new surface on the diffusion data- it seems that
> the transformation is inaccurate.(screenshot is attached)
> Any idea why?.
>
> Thanks, Shani
>
>

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