Hi Xin,

Are you using the QA tools from https://surfer.nmr.mgh.harvard.edu/fswiki/QATools? Those are specific to FS 5.3 (we should update the wiki). v7.1 includes an executable named `qatools.py` that functions similarly.

best

Andrew

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Xin Qi <xinqi2000@gmail.com>
Date: Thursday, August 12, 2021 at 12:00 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] about FreeSurfer QA tools errors

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Hi Freesurfer Community Support Team:

We would like to use FreeSurfer QA tools. 

After installing it, I tested it on one subject that finished Freesurfer recon-all processing using the latest FreeSurfer 7.1. but got errors that seem many files are missing in the mri, surf, stat folders created by FreeSurfer.

I attach the recon_checker summary log and zipped snaps file for your reference.

Looking forward to hearing from you. Thank you very much.

Best regards

Xin