Hi Tony, you can use bbregister to create the registration file. You might also look at the multi-modal tutorial on our wiki as this goes over the steps that you will need to get and apply the registration. For the 2nd question, you can use mris_anatomical_stats.

doug

ps. Please send questions to the list instead of me directly. Thanks!


On 6/5/12 2:37 PM, Jiang, Zhiguo wrote:

Hi, Douglas

Thanks for your comments. I was trying to run mri_vol2surf. But it asks for a registration file. Would youp lease tell me how to get that registration file? I figured that must be registering volume file to subject’s T1. (of course in my case, the volume file is already in T1 space since I drawed them on top of the subject T1 image). 

 

Another quick question is, once the label is created, is there a quick command to pull out the thickness values (mean etc )

Thanks a lot,

 

Best,

 

Tony

 

 

Zhiguo Jiang, Ph.D.

 

http://pain.loni.ucla.edu

 


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