You can resample the aseg to the native anatomical space with:

mri_vol2vol --mov aseg.mgz --targ rawavg.mgz --regheader --interp nearest --o aseg.native.nii

doug

Jena B. Hales wrote:

I converted my afni data to freesurfer to autosegment the anatomicals. In freesurfer I was able to create a register.dat file to register my freesurfer asegs with my afni anatomical. I want to analyze my functional data and aseg anatomicals in afni. How do I convert my aseg to afni and keep the register.dat information so that the aseg still registers to my afni BRIK anatomicals and functionals?

Thanks,
Jena

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Douglas N. Greve, Ph.D.
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