Mostly these:

https://pubmed.ncbi.nlm.nih.gov/15501102/

https://doi.org/10.1016/S0896-6273(02)00569-X

For a separate fornix seg, see https://surfer.nmr.mgh.harvard.edu/fswiki/ScLimbic

On 5/22/2024 1:34 PM, Ahsan Ali wrote:

        External Email - Use Caution        

Hello everyone,

Could anyone please help me to know which Atlas is used in the segmentation of corpus callosum, hippocampus, and fornix using freeSurfer from Brian MR images. I have gone through the literature but couldn't find it.

With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics (Biomedical Engineering Group)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552

---------- Forwarded message ---------
From: Fischl, Bruce R.,PHD <BFISCHL@mgh.harvard.edu>
Date: Wed, May 22, 2024, 10:52 PM
Subject: RE: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
To: Ahsan Ali <ahsan889960@gmail.com>


Can you please post to the list so that others can answer?

 

From: Ahsan Ali <ahsan889960@gmail.com>
Sent: Wednesday, May 22, 2024 1:04 PM
To: Fischl, Bruce R.,PHD <BFISCHL@mgh.harvard.edu>
Subject: Re: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus

 

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Dear sir,

 

It is not clear from these papers to me.

 

With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics (Biomedical Engineering Group)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552

 

On Wed, May 22, 2024, 8:19 PM Fischl, Bruce R.,PHD <BFISCHL@mgh.harvard.edu> wrote:

Mostly these:

 

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://pubmed.ncbi.nlm.nih.gov/15501102/

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://doi.org/10.1016/S0896-6273(02)00569-X

 

cheers

Bruce

From: Ahsan Ali <ahsan889960@gmail.com>
Sent: Wednesday, May 22, 2024 4:31 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>; Huang, Yujing <YHUANG43@mgh.harvard.edu>; Fischl, Bruce R.,PHD <BFISCHL@mgh.harvard.edu>
Subject: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus

 

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Dear FreeSurfer Team,

After reviewing the literature, I have a question: which atlases are used in the segmentation of the fornix, corpus callosum, and hippocampus from magnetic resonance images using FreeSurfer? This is a significant question for me, and I would appreciate a clear and concise answer. Please provide some relevant references.

 


With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics and Biomedical Engineering (AMBE)
Indian Institute of Technology Madras 
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552

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