Dear all,

I’d be very grateful for a bit of help with the following problem.

I’m running FreeSurfer 6.0 (I read a suggestion that there had been some compatibility issues running the current stable FS release with newer versions of openSUSE) on a cluster. However, nu_correct seems to be hitting an issue:

ncopen: filename "./tmp.mri_nu_correct.mni.9548/0/nu1_est.mnc.temp": No such file or directory

miopen: MINC package entry point

nu_estimate_np_and_em: crashed while running mincmath (termination status=768)

nu_correct: crashed while running nu_estimate_np_and_em (termination status=768)

ERROR: nu_correct

The directory exists, and there are several other files written here (“nu0.mnc”, “nu1_corr.mnc”, “nu1_mask.mnc”, “nu1_residue.mnc” and “nu1_temp.mnc”) so it doesn’t appear to be having an issue with write access to this location.

Many thanks in advance for your help,

Simon

____

Simon R. Cox

Centre for Cognitive Ageing and Cognitive Epidemiology

University of Edinburgh

7 George Square

Edinburgh EH8 9JZ