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What command are you using to generate the surfaces? I don't think this is done by default in recon-all

On 9/3/2023 1:22 PM, Srishyla, Diksha wrote:

External Email - Use Caution

Hello FreeSurfer Developers,
I am attempting to produce watershed surfaces (inner_skull, outer skull, outer skin, brain). I plan to use these for EEG functional connectivity analyses.

However, they turn out faulty (image attached).

Any insights as to why this might be happening?

1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b

2) Platform: Ubuntu 22.04.3 LTS

3) recon-all.log: see attached

Thank you for your time.

Best,
Diksha
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