My guess is to use mri_label2vol instead, and a mri_convert to convert to nii.gz

I hope this helps.
Marc.




On Thu, Feb 11, 2016 at 3:17 PM, Afzal, Afsana <AAFZAL@mgh.harvard.edu> wrote:
Hi,

How can I convert a surface .label file to a .nii format? I'm using mri_label2label in the following way but the output is always in .label not .nii:

mri_label2label
    --srclabel dlpfc-lh.label

    --outmask dlpfc-lh_mask.nii

    --s fsaverage

    --trglabel dlpfc-lh_mask.nii

    --regmethod surface

    --hemi lh


Thanks for your help,

Afsana

______________________________
Afsana Afzal

Clinical Research Coordinator
Massachusetts General Hospital
Division of Neurotherapeutics
Department of Psychiatry: Neurosciences
149 13th St, Room 2612
Charlestown, MA 02129
Phone: 617-643-5129
Fax: 617-726-4078

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