> Date: Thu, 15 Sep 2011 22:00:39 -0400
> From: Khoa@nmr.mgh.harvard.edu
> To: mj_coming@hotmail.com
> CC: sita@nmr.mgh.harvard.edu; jennifer_g_goldman@rush.edu; vy_dinh@rush.edu; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] manual editting problem
>
> Hi Jing,
>
> You have some white matter voxels missing in the wm.mgz for the rh. You
> can add some wm to that volume using the edit tool or you can also try
> control points. If you are adding wm, make sure you select the aux volume
> on the brush info toolbox. Fill in wm voxels for all slices. Control
> points would help with extending the pial surf on the lh.
>
> -Khoa
>
> >
> > Hi Bruce and Sita:
> >
> > Thanks for your relay. And Here are the images.
> >
> > Jing
> >
> >
> >
> > From: Jing Ming [mj_coming@hotmail.com]
> >
> > Sent: Thursday, September 15, 2011 7:31 PM
> >
> > To: Vy Dinh
> >
> > Subject: FW: [Freesurfer] manual editting problem
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >> CC: mj_coming@hotmail.com; jennifer_g_goldman@rush.edu; vydinh@rush.edu;
> >> freesurfer@nmr.mgh.harvard.edu
> >
> >> From: fischl@nmr.mgh.harvard.edu
> >
> >> Subject: Re: [Freesurfer] manual editting problem
> >
> >> Date: Thu, 15 Sep 2011 20:07:41 -0400
> >
> >> To: sita@nmr.mgh.harvard.edu
> >
> >>
> >
> >> Can you send an image?
> >
> >>
> >
> >>
> >
> >>
> >
> >> On Sep 15, 2011, at 6:38 PM, Sita Kakunoori <sita@nmr.mgh.harvard.edu>
> >> wrote:
> >
> >>
> >
> >> >
> >
> >> > How does the wm.mgz look. Correcting the white surface will correct
> >> the
> >
> >> > pial surface as well.
> >
> >> >
> >
> >> > Sita.
> >
> >> >
> >
> >> >
> >
> >> > On Thu, 15 Sep 2011, Jing Ming wrote:
> >
> >> >
> >
> >> >>
> >
> >> >> Hi Surfers:
> >
> >> >> We have been coming
> >
> >> >> across several gray matter regions that are not included within the
> >> pial
> >
> >> >> surface (red line) when it should be (e.g., very anterior parts of
> >> the
> >
> >> >> temporal lobe). From my understanding of similar posts on the forum,
> >> it
> >
> >> >> seems that there isn't a way to add this region to the pial surface
> >> so
> >
> >> >> that the missing brain matter is included. We have tried using the
> >> clone
> >
> >> >> tool to fill in this region, as per the tutorial and have
> >> experimented
> >
> >> >> with this tool using the tutorial data. I followed the steps in the
> >
> >> >> tutorial but could not observe any changes when the middle button was
> >
> >> >> selected. Does anyone have any ideas on how to troubleshoot this
> >
> >> >> issue? Can someone please explain to me why this is not possible?
> >> Also
> >
> >> >> how does Freesurfer determine what regions to include within the pial
> >
> >> >> surface? If there is a way that has been developed recently, please
> >
> >> >> enlighten me.
> >
> >> >>
> >
> >> >> -Jing
> >
> >> > _______________________________________________
> >
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> >
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> >
> >> >
> >
> >> >
> >
> >>
> >
> >>
> >
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> >
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