Dear Douglas N. Greve

As you commented, the command, you suggested, transformed well from the aparc+aseg.mgz with native space to MNI 152 space.

I also tried the command to transform fiber bundles (the merged_avg33_mni_bbr.mgz), extracted from TRACULA, to MNI space. But, the transformed fiber bundles were not in MNI 152 space.

Would you suggest the other transformation command or correct my mistake to MNI152 space for TRACULA fiber bundles in native space?

Sincerely yours

Woo-Suk, Tae

Seoul, Korea

On Fri, Apr 28, 2023 at 10:26 PM Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

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you mean you want to map the aparc+aseg.mgz from the subject space to the cvs/mni152 space using the cvs transform? Try this
mri_convert aparc+aseg.mgz -at cvs.m3z aparc+aseg.from-subject-to-cvs.mgz
where cvs.m3z is the cvs nonlinear registratiopn

On 4/21/2023 11:12 AM, Carlos Alcocer wrote:
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I registered a subject to mni space using the mri_cvs_register command with the --mni flag. However, the output files do not include a new aparc.a2009s+aseg.mgz. I wanted this atlas overlayed on the mni registered subject so I could extract one of the labels. Is this possible?

Thanks,

Carlos
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Woo-Suk, Tae Ph.D. Research Professor
Brain Convergence Research Center, Medical Research Center
Anam Hospital, Korea University Medical Center, Seoul, Korea
mobile: 82-10-9120-4629
office: 82-2-920-6831
email: wstae@korea.ac.kr, woosuk.tae@gmail.com,
wo ostae@gmail.com
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