<
janinthesky@gmail.com> wrote:
> Is this what you meant:
>
> First I tried
> s0964091@CRIC-0012:~$ recon-all
> home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM
> ERROR: Flag
> home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM
> unrecognized.
> home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM
> Linux CRIC-0012 2.6.31-19-generic #56-Ubuntu SMP Thu Jan 28 02:39:34 UTC
> 2010 x86_64 GNU/Linux
>
> recon-all exited with ERRORS at Mon Feb 22 14:39:27 GMT 2010
>
> Then I tried putting full path in front of both file sets
>
>
> s0964091@CRIC-0012:~$ recon-all -i
> home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM/Dhinakaran^Janani^-0002-0001-00001.dcm
> -i
> home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM/Dhinakaran^Janani^-0004-0001-00001.dcm
> -s subj001
> ERROR: cannot find
> home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM/Dhinakaran^Janani^-0002-0001-00001.dcm
> Linux CRIC-0012 2.6.31-19-generic #56-Ubuntu SMP Thu Jan 28 02:39:34 UTC
> 2010 x86_64 GNU/Linux
>
> recon-all exited with ERRORS at Mon Feb 22 14:41:36 GMT 2010
>
> Jan
>
>
> On 22 February 2010 14:30, Xue, Feng <
xfgavin@gmail.com> wrote:
>>
>> Try with full path, e.g.
>> /home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM
>>
>> On Mon, Feb 22, 2010 at 7:36 PM, Janani Dhinakaran
>> <
janinthesky@gmail.com> wrote:
>> > Hello,
>> > I ran recon-all on Friday. It ran for around a minute instead of 30-48
>> > hours. Unfortunately, when I try tkmedit and other such commands, the
>> > pictures don't visualise.
>> > So today I first confirmed that the SUBJECTS_DIR was in Desktop path.
>> > (Because over the weekend it had gone back to usr/local... path and so I
>> > re-exported it just now.)
>> > Then I tried running recon-all again.
>> >
>> >
>> >
>> > s0964091@CRIC-0012:~/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM$
>> > echo $SUBJECTS_DIR
>> > Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM
>> >
>> > s0964091@CRIC-0012:~/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM$
>> > recon-all -i Dhinakaran^Janani^-0002-0001-00001.dcm -i
>> > Dhinakaran^Janani^-0004-0001-00001.dcm -s subj001
>> > ERROR: SUBJECTS_DIR
>> > Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM does not
>> > exist.
>> >
>> > Can anyone help me understand what I can do?
>> > Thanks
>> > Jan
>> > --
>> > I am the Sun, I know no darkness.
>> >
>> > _______________________________________________
>> > Freesurfer mailing list
>> >
Freesurfer@nmr.mgh.harvard.edu
>> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >
>>
>>
>>
>> --
>> Best Regards
>>
>> Xue, Feng Phd. candidate
>> Major in Developmental Cognitive Neuroscience
>>
>> National Key Laboratory of Cognitive Neuroscience and Learning
>> Beijing Normal University
>> Beijing, China. 100875
>> Tel: +86-13810154455
>> web:
http://psychbrain.bnu.edu.cn
>> ==============================================
>> Welcome to MuDuo JinSheng BBS @ Beijing Normal University
>> telnet://
bbs.mdjs.org
>>
http://bbs.mdjs.org
>
>
>
> --
> I am the Sun, I know no darkness.
>