They are attached (assuming that the FS list allows small attachments).There is a script that details exactly how it was done.
--Michael Harms, Ph.D.----------------------------------------------------------- Conte Center for the Neuroscience of Mental DisordersWashington University School of MedicineDepartment of Psychiatry, Box 8134660 South Euclid Ave. Tel: 314-747-6173St. Louis, MO 63110 Email: mharms@wustl.edu
From: Sabin Khadka <mr.sabinkhadka@gmail.com>
Date: Wednesday, August 17, 2016 at 11:25 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu >, "Harms, Michael" <mharms@wustl.edu>
Subject: Re: [Freesurfer] FSFAST ROI atlas
Hi Michael- Is there anyway I can get those Gordon parcellation annot files?
Cheers,Sabin Khadka
On Wed, Aug 17, 2016 at 10:59 AM, Harms, Michael <mharms@wustl.edu> wrote:
FYI: I supplied a version of the “Gordon” parcellation in .annot format to Bruce a while back. He had expressed an interest in possibly including it as part of FS 6.0.
cheers,-MH
--Michael Harms, Ph.D.----------------------------------------------------------- Conte Center for the Neuroscience of Mental DisordersWashington University School of MedicineDepartment of Psychiatry, Box 8134660 South Euclid Ave. Tel: 314-747-6173St. Louis, MO 63110 Email: mharms@wustl.edu
From: <freesurfer-bounces@nmr.mgh.harvard.edu > on behalf of Doug Greve <greve@nmr.mgh.harvard.edu>
Reply-To: "freesurfer@nmr.mgh.harvard.edu " <freesurfer@nmr.mgh.harvard.edu >
Date: Wednesday, August 17, 2016 at 9:55 AM
To: "freesurfer@nmr.mgh.harvard.edu " <freesurfer@nmr.mgh.harvard.edu >
Subject: Re: [Freesurfer] FSFAST ROI atlas
I don't know anything about the Power atlas. For the HCP, if they have it in annotation format, then you can run mri_aparc2aseg to map it into the anatomical volume, then specify that volume when you run fcseed-config. To get the mri_aparc2aseg command line, look in the recon-all to find out how aparc+aseg.mgz is created
On 8/17/16 9:28 AM, Sabin Khadka wrote:
Hi Doug- Do you think it is possible to use these atlas? If so could you point me to steps that needed to be done.
Thanks for your help!
Cheers,Sabin Khadka
On Mon, Aug 15, 2016 at 10:39 AM, Douglas Greve <greve@nmr.mgh.harvard.edu> wrote:
______________________________I have not used them myself.
On 8/15/16 10:23 AM, Sabin Khadka wrote:
HI all-
I am using FSFAST to extract ROI time series values for further connectivity analysis. I've used Desikan, Destriuex and DKT atlas.
However, I was wondering if anyone has used Power et.al 2011 rois and/or HCP's newly defined 180/per hemi rois to extract time series data. If so could you please advise me on how do it (if they are at all possible).
Cheers,Sabin Khadka
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The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.