Hi Doug

Thanks for you response. The command line is: selxavg3-sess -s subject_0101 -d . -analysis DoD_looming_lh.

I checked the basename function in the matlab installed in my computer, which is 2010b. It seems that the basename in the 2010b matlab only accepts one parameter. I tried two ways to avoid the problem. First, I replaced the matlab's basename function with my own basename function. Second, I removed the motion regressor from the analysis.info. The two method indeed avoided the basename function error, but new errors were created as the following:

Error using ==> fmri_hemodyn

Too many input argument.

Error in ==> flac_ev2irf at 74

xirf = fmri_hemodync(tirf, delay, tau, alpha);

Error in ==> flac_desmat at 66

[xirf tirf] = flac_ev2irf(ev, TER, flac, RefEventDur);

Error in ==> flac_customize at 356

flacnew = flac_desmat(flacnew);

Error in ==> fast_selxavg3 at 65

flac0=flac_customize(flac0);

I suspected that the errors was caused by matlab? if so, what version is required to run 5.3 version correctly?

Thanks for your help!

Xiaomin

Date: Thu, 19 Jun 2014 20:41:28 +0200
From: greve@nmr.mgh.harvard.edu
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Basename error

what is your command line and terminal output

On 6/19/14 4:36 PM, Xiaomin Yue wrote:

Hi all,

I am analyzing functional data using fsfast 5.3 with the error: Error using==> basename. It seems that the same problem was reported before in the mail list (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-January/021898.html), but I can't find answer in the discussion thread in the above link.

Any suggestions? Thanks,

Xiaomin Yue
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